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Rubin, D., Costa, A. dos S., Ponnapati, M., & Jacobson, J. (2025). RiboGen: RNA Sequence and Structure Co-Generation with Equivariant Multiflow. AI for Nucleic Acids Workshop at ICLR 2025. Best Paper Award.
Weis, J.W., Jacobson, J.M. Learning on knowledge graph dynamics provides an early warning of impactful research. Nat Biotechnol (2021). https://doi.org/10.1038/s41587-021-00907-6
Chatterjee, P., Ponnapati, M., Kramme, C. et al. Targeted intracellular degradation of SARS-CoV-2 via computationally optimized peptide fusions. Commun Biol 3, 715 (2020). https://doi.org/10.1038/s42003-020-01470-7
Noah Jakimo, Pranam Chatterjee, Joseph M. Jacobson. Chimeric CRISPR guides enhance Cas9 target specificity, doi: https://doi.org/10.1101/147686
Jakimo, N. "Genomic nucleic acid memory storage with directed endonuclease"
Fracchia, C. "Language & tools for context-aware biology"
Sterling, B. "Exploration of Methods for Many-Site Genome Editing with MAGE"
Joo, J., Chow, B. Y., Prakash, M., Boyden, E. S., Jacobson, J. M. (2011) Face-selective electrostatic control of hydrothermal zinc oxide nanowire synthesis, Nature Materials 10(8):596-601.
Chow, B. "Photoelectrochemical Synthesis of Low-Cost DNA Microarrays"
Griffith, S. "Growing Machines"
Kong, D. "Nanostructure Fabrication by Electron and Ion Beam Patterning of Nanoparticles"
Ridley, B. "Printed Inorganic Transistors"
Chow, B. "The Design of a Molecular Assembly Line Based on Biological Molecules"